RetrogeneDB ID: | retro_chof_1290 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_251821:147..566(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSCHOG00000009153 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 85.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSS-GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
MSKRGRGGS..GAK.RISLGLPVGAVINC.DNTGAKNLYIISVKGIKG.LNRLPAAGVG.MVMATVKKGK | |
Retrocopy | MSKRGRGGSL<GAKLRISLGLPVGAVINCTDNTGAKNLYIISVKGIKGWLNRLPAAGVGEMVMATVKKGK |
Parental | PELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI |
PELRKKVHPAVVIRQ.KS...KD...LYFEDN.G..VN.KGEMKG.AITGP.AKE.ADLWPRIA.NAGSI | |
Retrocopy | PELRKKVHPAVVIRQ*KSFQGKDSMSLYFEDNTGITVNKKGEMKGPAITGPAAKERADLWPRIATNAGSI |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |