RetrogeneDB ID: | retro_pabe_455 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:150415116..150415391(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSPPYG00000008501 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:RefSeq peptide;Acc:NP_001124779] |
Percent Identity: | 59.14 % |
Parental protein coverage: | 65. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISV-KGIKGRLNRLPAAGVGDMVM-ATVKKG |
MSK.G.GG.S..K...SLG.P.GA.INC.DNTG.KNLYI.SV.KGIKG.LNRL..AGVGDMVM....K.. | |
Retrocopy | MSKQGCGGFSSVKCWNSLGFPIGAKINCVDNTGGKNLYIMSV>KGIKGQLNRLSTAGVGDMVM>SVNKGK |
Parental | KPELRKKVHPAVVIRQRKSYRRK |
.PE.RK...P.VV..Q.K..... | |
Retrocopy | QPEHRKEIYPTVVVQQQKNHTKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 106 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 125 .37 RPM |
SRP007412_heart | 0 .00 RPM | 170 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 266 .33 RPM |
SRP007412_liver | 0 .03 RPM | 245 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_164 |
Macaca mulatta | retro_mmul_384 |