RetrogeneDB ID: | retro_chof_2565 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_86659:8602..8974(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000009802 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSCHOG00000009153 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 88.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSKRGRGGSSGAKFR-ISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGK |
MSK..R..SSG.K.R.ISL.L.V..VINCADNTGAK.L.I.S..G.KG.LNRL.AAGVGDMVM.TVKK.K | |
Retrocopy | MSK*ERSRSSGTKSR<ISLCLLVEVVINCADNTGAKSLCIMSLMGSKGLLNRLVAAGVGDMVMTTVKKNK |
Parental | PELRK-KVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE |
.EL.K.K.HP..VI.Q.K.Y..KD.V.LY.EDNA.VI..NKGE.K.SAIT.P.AKE | |
Retrocopy | AELKK>KIHPVAVI*Q*KAYQGKDNVLLYSEDNATVIIDNKGEKKSSAITEPGAKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |