RetrogeneDB ID: | retro_mmus_2319 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:8461491..8461814(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSMUSG00000071415 | ||
Aliases: | Rpl23, 2810009A01Rik | ||
Description: | ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455] |
Percent Identity: | 86.24 % |
Parental protein coverage: | 77.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSK.G.GGSSGAKFRI.LGLPVGAVINCA.NT..KNLYIISVKGIKG.LNRLPAAGVGDMVMATVKKGKP | |
Retrocopy | MSK*GHGGSSGAKFRIFLGLPVGAVINCANNTRGKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLYFED-NAGVIVNN |
ELRKKV.PA.VIRQ.KSY.RKDG.FLYFE..NAG.IVNN | |
Retrocopy | ELRKKVPPAMVIRQQKSYGRKDGMFLYFEE<NAGIIVNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 71 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .14 RPM |
SRP007412_heart | 0 .00 RPM | 126 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 162 .24 RPM |
SRP007412_liver | 0 .00 RPM | 144 .65 RPM |
SRP007412_testis | 0 .00 RPM | 107 .21 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_106632 | 568 libraries | 247 libraries | 234 libraries | 18 libraries | 5 libraries |