RetrogeneDB ID: | retro_mmus_583 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:87759309..87759563(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSMUSG00000071415 | ||
Aliases: | Rpl23, 2810009A01Rik | ||
Description: | ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455] |
Percent Identity: | 52.27 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VGDMVMATVKKGKPE-LRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK-GEMKGSAITG-PVAK |
VGD..MATVKKGKPE.....VHPA....Q.K...RKD.V.L.FEDNA.V...NK..E..G.AI......K | |
Retrocopy | VGDILMATVKKGKPE<VXXXVHPALTV*Q*KL*QRKDKVCLCFEDNAEVAISNK<SEVQGPAIINRSSCK |
Parental | ECADL-WPRIASNAGSIA |
E...L..PR.A.NA.S.A | |
Retrocopy | EMLEL>YPRVAANADSTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 71 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .14 RPM |
SRP007412_heart | 0 .00 RPM | 126 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 162 .24 RPM |
SRP007412_liver | 0 .00 RPM | 144 .65 RPM |
SRP007412_testis | 0 .05 RPM | 107 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_2445 |