RetrogeneDB ID: | retro_btau_65 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:83474567..83474966(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000048179 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSBTAG00000003229 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:Q3T057] |
Percent Identity: | 90.15 % |
Parental protein coverage: | 94.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHP |
SSGAK.RISLGLPVGAVINCADNTGAKNLYIISVKGIK..LNRL.AAGVGDMVMATVKKGKPELRKK.H. | |
Retrocopy | SSGAKYRISLGLPVGAVINCADNTGAKNLYIISVKGIKVQLNRLSAAGVGDMVMATVKKGKPELRKKEHL |
Parental | AVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
.VVIRQRKSYRR.DGVFLYFEDNAGV.VNNKGEMKGSAITGP.AKECA.LWP.IASNA.SIA | |
Retrocopy | TVVIRQRKSYRREDGVFLYFEDNAGVTVNNKGEMKGSAITGPIAKECAGLWPGIASNASSIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 380 .67 RPM |
ERP005899_muscle | 0 .00 RPM | 1119 .13 RPM |
SRP017611_brain | 0 .00 RPM | 81 .17 RPM |
SRP017611_kidney | 0 .06 RPM | 274 .55 RPM |
SRP017611_liver | 0 .00 RPM | 179 .63 RPM |
SRP030211_testis | 0 .00 RPM | 110 .96 RPM |