RetrogeneDB ID: | retro_chof_1610 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_338814:862..1243(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSCHOG00000009153 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 90.55 % |
Parental protein coverage: | 90.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL |
..G..G.SGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKG.LNRLPAAGVGDMVMATVKKGKPEL | |
Retrocopy | RQGHSGFSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPEL |
Parental | RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLW |
RKKVHPAVVIRQ.KSY.RKDGV.LYFEDNAGVIVNNKGEMKG.AIT.PVAKECA.LW | |
Retrocopy | RKKVHPAVVIRQ*KSYWRKDGVSLYFEDNAGVIVNNKGEMKGFAITVPVAKECAHLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |