RetrogeneDB ID: | retro_ptro_2513 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:24865946..24866362(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSPTRG00000009079 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 80.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK-GRLNRL-PAAGVGDMVMATVKKG |
MSK.G.G.SSGAKF.ISLGL.VG..IN.ADNTGAKNLYIISVK.I..GRLNRL.PA..VGD..MATVKK. | |
Retrocopy | MSKQGCGESSGAKFWISLGLLVGSLINNADNTGAKNLYIISVKRIR<GRLNRL>PAS-VGDTGMATVKKD |
Parental | KPELRKKVHPAVVIRQRKSYR-RKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAG |
KPELRKKVHPAVV..Q.KSY..RKDGVFLYFE.NAGVI..NK.EMKGSAITGPVAKECADLWPRIA.N.G | |
Retrocopy | KPELRKKVHPAVVT*QQKSYG<RKDGVFLYFEGNAGVIIKNKDEMKGSAITGPVAKECADLWPRIAFNTG |
Parental | SIA |
SIA | |
Retrocopy | SIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 107 .62 RPM |
SRP007412_cerebellum | 0 .04 RPM | 139 .52 RPM |
SRP007412_heart | 0 .03 RPM | 192 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 321 .35 RPM |
SRP007412_liver | 0 .07 RPM | 256 .73 RPM |
SRP007412_testis | 0 .00 RPM | 98 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3710 |
Gorilla gorilla | retro_ggor_2508 |
Pongo abelii | retro_pabe_3145 |