RetrogeneDB ID: | retro_oana_76 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig43428:4678..4979(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSOANG00000001230 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 72.28 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK |
I...GI...LNRLPAA.VGDMV.ATVKKGKP.LRKKV.PAV..RQRK..RR..G...YFEDNAGVIVN.K | |
Retrocopy | ILFQGIGACLNRLPAASVGDMVLATVKKGKPDLRKKVLPAVIVRQRKAWRRREGYYIYFEDNAGVIVNPK |
Parental | GEMKGSAITGPVAKECADLW-PRIASNAGSI |
GEMKGSAITGPVAKECA.LW.P.I...A..I | |
Retrocopy | GEMKGSAITGPVAKECAELW>PKISAAAPAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 161 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 197 .00 RPM |
SRP007412_heart | 0 .18 RPM | 334 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 168 .77 RPM |
SRP007412_liver | 0 .00 RPM | 174 .75 RPM |
SRP007412_testis | 0 .00 RPM | 227 .48 RPM |