RetrogeneDB ID: | retro_chof_1599 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_33586:13478..13897(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSCHOG00000009153 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 76.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSK.G.GGSS.AKF.ISLGL.VGAVIN.A.NTGAK..Y..SVKG..GRLNRLPAAGVG..VMATVK.GKP | |
Retrocopy | MSK*GHGGSSSAKFQISLGLLVGAVINYAGNTGAKTQYTVSVKGLRGRLNRLPAAGVGGLVMATVKEGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVA-KECADLWPRIASNAGSI |
ELRKKVHP.VVI.Q.K...RKD.VFL.FEDNAGVIV.NK.EMKGSAITGP.A.KECADL..R.A.NAGS. | |
Retrocopy | ELRKKVHPVVVI*QQKLCWRKDSVFL*FEDNAGVIVSNKREMKGSAITGPAA<KECADLCTRTAANAGSL |
Parental | A |
A | |
Retrocopy | A |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |