RetrogeneDB ID: | retro_btau_382 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:82402261..82402532(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSBTAG00000003846 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L37a [Source:UniProtKB/Swiss-Prot;Acc:Q3MIC0] |
Percent Identity: | 81.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT |
MAKRTK.VGIVGKY.TR.GASLRKMVKKIEISQHAKYT..FCG.TKMKR.AVGIW.CGSCMKTVAGGAWT | |
Retrocopy | MAKRTK-VGIVGKYRTR*GASLRKMVKKIEISQHAKYTYPFCGNTKMKR*AVGIWNCGSCMKTVAGGAWT |
Parental | -YNTTSAVTVKSAIRR-LKELKDQ |
...TTS...VKSAIRR...ELKDQ | |
Retrocopy | <MHTTSGAIVKSAIRR<TDELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 245 .27 RPM |
ERP005899_muscle | 0 .00 RPM | 776 .84 RPM |
SRP017611_brain | 0 .09 RPM | 70 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 207 .75 RPM |
SRP017611_liver | 0 .08 RPM | 128 .97 RPM |
SRP030211_testis | 0 .06 RPM | 95 .87 RPM |