RetrogeneDB ID: | retro_fcat_1756 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:47582666..47582942(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 67.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAKRTKKVGIVGKYG-TRYGASLRKMVKKIEISQHAKYTCSFCG-KTKMKRRAVGIWHCGSCMKTVAGGA |
MAK...K..I....G...YG.SLRKM.KKIEISQHAKYTC.FCG.KTKMKR..VG.WHCGS.MKTV.GG. | |
Retrocopy | MAKMHQKFRIIVNRG<IHYGVSLRKMAKKIEISQHAKYTCFFCG>KTKMKRGTVGMWHCGSQMKTVVGGT |
Parental | WTYNTTSAVTVKSAIRRLKELKDQ |
W.Y.T.SA.T..S.IRR..ELKDQ | |
Retrocopy | WSYTTGSAITMMSTIRRPEELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |