RetrogeneDB ID: | retro_fcat_1099 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:76095994..76096266(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSFCAG00000027010 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 71.74 % |
Parental protein coverage: | 98.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKRTKKVGIV-GKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAW |
.AK..KKVGIV..KY.T.YGASLRKMVK..EISQH.KYTCSF.GKTK.KR.AVGIW...SC.K.V.G.AW | |
Retrocopy | IAKHAKKVGIV<HKYRTHYGASLRKMVKNNEISQHIKYTCSFWGKTKIKRQAVGIWCWDSCVKMVVGSAW |
Parental | TYNTTSAVTVKSAIRRLKELKD |
T.NTTS..TVKSAIRR.K.L.D | |
Retrocopy | TCNTTSTATVKSAIRRMKGLND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 219 .82 RPM |
SRP017611_liver | 0 .00 RPM | 103 .31 RPM |