RetrogeneDB ID: | retro_btau_1366 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:115634883..115635149(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000019597 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSBTAG00000003846 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L37a [Source:UniProtKB/Swiss-Prot;Acc:Q3MIC0] |
Percent Identity: | 69.15 % |
Parental protein coverage: | 97.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAKRTKKVGIVGKYG-TRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGG-A |
M.KRT..V.IVGKYG.TR..ASLRKM..KIEISQH..YTCSFCGKTKM.RRA.G.W.CGSC..TVAGG.A | |
Retrocopy | MVKRTEEVRIVGKYG<TRPSASLRKMARKIEISQHVDYTCSFCGKTKMTRRAGGVWLCGSCVRTVAGG<A |
Parental | WTYNTTSAVT-VKSAIR-RLKELK |
WT...TSA.T....A.R.RL.ELK | |
Retrocopy | WTCRSTSAIT<WRAAVR<RLEELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 245 .27 RPM |
ERP005899_muscle | 0 .00 RPM | 776 .84 RPM |
SRP017611_brain | 0 .05 RPM | 70 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 207 .75 RPM |
SRP017611_liver | 0 .00 RPM | 128 .97 RPM |
SRP030211_testis | 0 .07 RPM | 95 .87 RPM |