RetrogeneDB ID: | retro_hsap_2482 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 20:43095206..43095482(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226243 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSG00000197756 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 89.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT |
MAK.TKKVGIVGKYGTRYGASL.KMVKK.EISQ.AKYTCSFCGKTKMKR.A.GIWHCGS..KTVAGGAWT | |
Retrocopy | MAKPTKKVGIVGKYGTRYGASLWKMVKKVEISQQAKYTCSFCGKTKMKR*AAGIWHCGSRVKTVAGGAWT |
Parental | YNTTSAVTVKSAIRRLKELKDQ |
YNTTSA.TVKSAIR.LKELKDQ | |
Retrocopy | YNTTSAITVKSAIRSLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 446 .28 RPM |
bodymap2_adrenal | 0 .02 RPM | 532 .92 RPM |
bodymap2_brain | 0 .02 RPM | 150 .06 RPM |
bodymap2_breast | 0 .02 RPM | 359 .89 RPM |
bodymap2_colon | 0 .04 RPM | 548 .85 RPM |
bodymap2_heart | 0 .02 RPM | 183 .71 RPM |
bodymap2_kidney | 0 .02 RPM | 239 .25 RPM |
bodymap2_liver | 0 .06 RPM | 207 .77 RPM |
bodymap2_lung | 0 .12 RPM | 468 .39 RPM |
bodymap2_lymph_node | 0 .00 RPM | 598 .08 RPM |
bodymap2_ovary | 0 .17 RPM | 602 .34 RPM |
bodymap2_prostate | 0 .00 RPM | 811 .13 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 726 .73 RPM |
bodymap2_testis | 0 .04 RPM | 359 .26 RPM |
bodymap2_thyroid | 0 .08 RPM | 295 .56 RPM |
bodymap2_white_blood_cells | 0 .20 RPM | 620 .54 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CZC | POLR2A | 20:43095607..43096147 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_100968 | 12 libraries | 1 library | 12 libraries | 15 libraries | 1789 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1436 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .17 RPM |
CEU_NA11843 | 0 .34 RPM |
CEU_NA11930 | 0 .39 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .25 RPM |
CEU_NA12751 | 0 .12 RPM |
CEU_NA12760 | 0 .18 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .08 RPM |
CEU_NA12873 | 0 .32 RPM |
FIN_HG00183 | 0 .14 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .12 RPM |
FIN_HG00338 | 0 .19 RPM |
FIN_HG00349 | 0 .11 RPM |
FIN_HG00375 | 0 .15 RPM |
FIN_HG00377 | 0 .18 RPM |
FIN_HG00378 | 0 .11 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .19 RPM |
GBR_HG00114 | 0 .11 RPM |
GBR_HG00119 | 0 .17 RPM |
GBR_HG00131 | 0 .11 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .19 RPM |
GBR_HG00142 | 0 .14 RPM |
GBR_HG00143 | 0 .10 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .22 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .12 RPM |
TSI_NA20765 | 0 .12 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .13 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .16 RPM |
YRI_NA19099 | 0 .16 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .14 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .08 RPM |