RetrogeneDB ID: | retro_mmus_2070 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:103843414..103843655(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082845 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37a | ||
Ensembl ID: | ENSMUSG00000046330 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:MGI Symbol;Acc:MGI:98068] |
Percent Identity: | 64.2 % |
Parental protein coverage: | 85.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TKKVGIVGKYGTRYGASL-RKMVKKIE-ISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYN |
TKK.GI..KYGTRYGASL.RK...K....S.......S........RRAV.IWHCGSCMKTVA.GAWTYN | |
Retrocopy | TKKIGIIRKYGTRYGASL>RKW*RKLKSASKPSTLVPSAARRR*RDRRAVSIWHCGSCMKTVAAGAWTYN |
Parental | TTSAVTVKSAI |
TTS.VTVKSAI | |
Retrocopy | TTSEVTVKSAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 32 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .41 RPM |
SRP007412_heart | 0 .00 RPM | 39 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .62 RPM |
SRP007412_liver | 0 .00 RPM | 35 .64 RPM |
SRP007412_testis | 0 .00 RPM | 37 .83 RPM |