RetrogeneDB ID: | retro_mmus_830 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:101353311..101353543(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082478 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl37a | ||
Ensembl ID: | ENSMUSG00000046330 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:MGI Symbol;Acc:MGI:98068] |
Percent Identity: | 85.9 % |
Parental protein coverage: | 83.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TRYGASLRK-MVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIR |
TRYGASLRK.MVKK.EISQHAKY.CSFCGKTKMK.RAVGIWH.GSC.KT.A.GAWTY..TSA.TVKSAIR | |
Retrocopy | TRYGASLRK>MVKKTEISQHAKYSCSFCGKTKMKSRAVGIWHWGSCVKTAASGAWTYTPTSAGTVKSAIR |
Parental | RLKELKDQ |
RLKELKDQ | |
Retrocopy | RLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 32 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .41 RPM |
SRP007412_heart | 0 .03 RPM | 39 .16 RPM |
SRP007412_kidney | 0 .04 RPM | 39 .62 RPM |
SRP007412_liver | 0 .00 RPM | 35 .64 RPM |
SRP007412_testis | 0 .05 RPM | 37 .83 RPM |