RetrogeneDB ID: | retro_amel_1116 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192918.1:158061..158538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSAMEG00000013632 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 79.25 % |
Parental protein coverage: | 79.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGHPAPNFKATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGN.KIGHPAPNFKA..VMPDGQFKD.SLS.YKGKY..FFFYPL..TFVC.TEII.F.D.AEEFKKLN | |
Retrocopy | MSSGNVKIGHPAPNFKAMVVMPDGQFKDISLSNYKGKYIIFFFYPLHSTFVCRTEIIVFNDKAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIG.SVDSHF..LA..N.PKKQGGLGP.N.PLVSD.KRTI.QDYGVL.AD..I.FR.LF.IDDKGIL. | |
Retrocopy | CQVIGVSVDSHFYCLA*TNAPKKQGGLGPTNMPLVSDSKRTITQDYGVLEADGDILFRDLFTIDDKGILQ |
Parental | QITVNDLPVGRSVDETLRL |
QITVN.L.VG.SVDETLRL | |
Retrocopy | QITVNVLLVGQSVDETLRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |