RetrogeneDB ID: | retro_sara_633 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_245791:59086..59466(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSSARG00000004703 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 82.81 % |
Parental protein coverage: | 74.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRAIAQ |
PLDFTFVCP..I.AFSDRAEE.KKLN..VIGASVDSHFC.L..INTP.KQ.GL.PMNIP.VSDP..AI.. | |
Retrocopy | PLDFTFVCPMKINAFSDRAEELKKLNFLVIGASVDSHFCQLTRINTPMKQRGLSPMNIPFVSDPEPAID* |
Parental | DYG-VLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGE |
DYG..LKADEGISFR...IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGE | |
Retrocopy | DYG<FLKADEGISFRVHCIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |