RetrogeneDB ID: | retro_ocun_1064 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:115808648..115809245(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000000889 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSOCUG00000005951 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 98.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN | |
Retrocopy | MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPL.SDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR | |
Retrocopy | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
Parental | QITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
QITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAG.KPGSDTIKPDVQKSKEYFSKQK | |
Retrocopy | QITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGRKPGSDTIKPDVQKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 11 .42 RPM | 78 .37 RPM |
SRP017611_kidney | 33 .55 RPM | 226 .23 RPM |
SRP017611_liver | 16 .73 RPM | 118 .85 RPM |