RetrogeneDB ID: | retro_rnor_2292 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:58073326..58073924(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSRNOG00000017194 | ||
Aliases: | Prdx1, Hbp23 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q63716] |
Percent Identity: | 88.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSSGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVF-FFYPLDFTFVCPTEIIAFSDRAEEF-KK |
.SSGNAK.GHPAP.FKA.AVMPDGQFKDISLS.YKGKYVVF..FYPLDFTF.CPTEIIAFSDRAEE..KK | |
Retrocopy | ISSGNAKVGHPAPNFKAMAVMPDGQFKDISLSEYKGKYVVF>LFYPLDFTFLCPTEIIAFSDRAEEL<KK |
Parental | LNCQVIGASVDSHFCHLAWINTPKKQGGL-GPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKG |
L.CQVIGASVDSHFCH.AWINT.KKQGGL..PMNIPLVSDPKRTIAQD.GVLKADEGISFRGLFIIDDK. | |
Retrocopy | LICQVIGASVDSHFCHVAWINTLKKQGGL>DPMNIPLVSDPKRTIAQDDGVLKADEGISFRGLFIIDDKS |
Parental | ILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
ILRQI.INDLPVG.SVDEI.RLVQAFQFTDKHGEVCPAGWKPG.DTI.PD.NKSKEYFSKQK | |
Retrocopy | ILRQIIINDLPVGLSVDEIRRLVQAFQFTDKHGEVCPAGWKPGCDTI*PDINKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .55 RPM |
SRP017611_liver | 0 .00 RPM | 185 .37 RPM |