RetrogeneDB ID: | retro_etel_2121 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_66735:835..1433(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSETEG00000007922 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 98.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSSGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN | |
Retrocopy | MSSGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSDSKRTIAQDYGVLKVDEGISFRGLFIIDDKGILR |
CQVIGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSD.KRTIAQDYGVLKVDEGIS.RGLFIIDDKGILR | |
Retrocopy | CQVIGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSDPKRTIAQDYGVLKVDEGISLRGLFIIDDKGILR |
Parental | QITVNDLPVGRSVDETLRLVQAF-QFTDKHGEVCPAGWKPGSDTIKPDVQKSREYFAKQK |
QITVNDLPVGRSVDETLRLVQAF.QFTDKHGEVCPAGWKPGSDTIKPDVQKSREYFAKQK | |
Retrocopy | QITVNDLPVGRSVDETLRLVQAF>QFTDKHGEVCPAGWKPGSDTIKPDVQKSREYFAKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |