RetrogeneDB ID: | retro_btau_1299 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:104005242..104005633(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSBTAG00000003642 | ||
Aliases: | PRDX1, PRX1 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q5E947] |
Percent Identity: | 78.03 % |
Parental protein coverage: | 65.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KKLNCQVIGASVDSHF-CHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDD |
..LNCQV...SVD.HF.CHLAWIN.P.KQGGLGP.NIPLISDPK.TIAQDYGVLKADEGISFR.LF..DD | |
Retrocopy | ERLNCQVMDVSVDFHF>CHLAWINAPRKQGGLGPVNIPLISDPKGTIAQDYGVLKADEGISFR-LFTTDD |
Parental | KGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSK |
KGIL..IT.NDLPVG.SVD.TLRL.Q.FQF.D..G.VCPAGWKPGS.T.K.DVQKSKEYFS. | |
Retrocopy | KGIL*KITTNDLPVGHSVDATLRLGQDFQFIDTCGKVCPAGWKPGSNTVKSDVQKSKEYFSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 21 .99 RPM |
ERP005899_muscle | 0 .00 RPM | 350 .10 RPM |
SRP017611_brain | 0 .00 RPM | 66 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 135 .61 RPM |
SRP017611_liver | 0 .00 RPM | 15 .93 RPM |
SRP030211_testis | 0 .01 RPM | 95 .05 RPM |