RetrogeneDB ID: | retro_ocun_1124 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:157970039..157970363(-) | ||
Located in intron of: | ENSOCUG00000010695 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSOCUG00000005951 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 80.36 % |
Parental protein coverage: | 54.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSSGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
M.SGNA..GHPAP.FKATA.MPDGQFK..SLSDYKGKYIVFFFY.LDF.FVC.TEIIAFS.RAEEFKKL. | |
Retrocopy | MFSGNARTGHPAPYFKATAIMPDGQFKNTSLSDYKGKYIVFFFYTLDFPFVCSTEIIAFSGRAEEFKKLS |
Parental | CQ-VIGASVDSHFCHL-AWINTPK-KQGGLGPMNIPLISDPK |
CQ.VIGASVDSHFCHL.AW.NTPK..QGGLG..NIPL...PK | |
Retrocopy | CQ<VIGASVDSHFCHL<AWFNTPK<RQGGLGHVNIPLVAGPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 226 .23 RPM |
SRP017611_liver | 0 .00 RPM | 118 .85 RPM |