RetrogeneDB ID: | retro_chof_1140 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_209993:604..1086(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSCHOG00000003358 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 55.56 % |
Parental protein coverage: | 98.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KYVVF-FFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLV |
KY..F.FFYPLDFTFVCPTEI.AF.D.A..F......V...SVDSHF.HLAW.NTP.K..GL..MNI.L. | |
Retrocopy | KYLLF<FFYPLDFTFVCPTEIVAFGDKANGFHDVSYEVLSVSVDSHFSHLAWINTPRKNDGLDHMNITLL |
Parental | SDPKRTISQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPA |
SD....ISQDYGVL....G....GLFI.D..G......V.DLPVG..V.ET..LV.AF.F....GEV.PA | |
Retrocopy | SDLTKQISQDYGVLLEGAGLAQKGLFITDPNGVIKHLSVSDLPVGQYVEETVHLVKAFLFVGTRGEVFPA |
Parental | GWKPGSDTIKPDVQKSKEYFSK |
.W...S.TIKP....SKE.F.. | |
Retrocopy | NWTLDSPTIKPNPTASKE*FEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |