RetrogeneDB ID: | retro_cpor_398 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_14:19269889..19270327(-) | ||
Located in intron of: | ENSCPOG00000012114 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSCPOG00000014137 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.26 % |
Parental protein coverage: | 75.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DSKMSSGNAKIG-HPAPNFKATAVMPDGQFKDISLSDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEF |
.S...SGNAK...HP.PNFK..AV....QFK.I.L.DYK.K..V.FF........C.......S...E.F | |
Retrocopy | ESSTLSGNAKFS<HPNPNFKGIAVTQNDQFKAINLPDYKEKQVV-FFFLPS*LQPCTLRESLLSVTHEKF |
Parental | KKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGIS-FRGLFIIDD |
KKL.CQ...ASVDSHFCHLA.IN.P.KQG.L.PMN.PLV.D.K.TIA...G..K..E.IS...GL.I..D | |
Retrocopy | KKLKCQ---ASVDSHFCHLA*INIPNKQGRLRPMNVPLVLDHKGTIAL-MGSKKTEESIS>IQGLLITED |
Parental | KGILRQITVNDLPVG |
K....QI..NDL.VG | |
Retrocopy | KDSYQQI--NDLCVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 48 .26 RPM |
SRP017611_kidney | 0 .21 RPM | 229 .27 RPM |
SRP017611_liver | 0 .09 RPM | 26 .51 RPM |
SRP040447_lung | 0 .10 RPM | 170 .67 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 131 .16 RPM |