RetrogeneDB ID: | retro_etel_1245 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_234928:2087..2681(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSETEG00000007922 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 79.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSSGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFF-FYPLDFTFVCPTEIIAFSDRAEEFKKL |
MSSG.AKIGH..P.FKATAVM.DG.FKDISL.DY.GKYIV.F.F..LDFTFV.P.EIIAFSDRAEEF.KL | |
Retrocopy | MSSGPAKIGHTDPTFKATAVMLDG*FKDISLADYNGKYIVLF<FNLLDFTFVGPMEIIAFSDRAEEF*KL |
Parental | NCQVIGASVDSHFCHLAWINTPKKEGGLGPMNI-PLVSDSKRTIAQDYGVLKVDEGISFRGLFIIDDKGI |
NCQVI.ASVDSHFCHL.WINTPK...GLGPMNI..L.SD.K.TIA.D.GVL..DEGI.FRGLFIIDDKGI | |
Retrocopy | NCQVIDASVDSHFCHLSWINTPKEQRGLGPMNI<LLISDPKCTIA*DNGVLNGDEGIPFRGLFIIDDKGI |
Parental | LRQITVNDLPVGRSVDE-TLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSREYFAKQK |
L.QIT.NDLPVG.S.DE..L.LVQ.FQFTDKHGEVCPAGWKPGSDTIKPDVQKS..YF.KQK | |
Retrocopy | LQQITINDLPVGHSGDE<DLKLVQDFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKDYFPKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |