RetrogeneDB ID: | retro_itri_631 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393308.1:3769810..3770124(+) | ||
Located in intron of: | ENSSTOG00000000462 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSSTOG00000023413 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 66.36 % |
Parental protein coverage: | 54.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KKQGGLGPMNIPLISDPKRTIAQDYGV-LKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLV |
KKQGGL.PMNIP..SD.K.T..QDYGV.L.ADEGISFR.LF.ID.K.I..QI.VND..V..SVD.T.... | |
Retrocopy | KKQGGLRPMNIPIVSDTKCTLVQDYGV>LEADEGISFRCLFDIDNKDIF*QINVNDFHVDHSVDKT---- |
Parental | QAFQFTDKHGEVCPAGWKPGSD-TIKPDVQRSKEYFSKQK |
QAFQFTDK...V..A..KP.SD..IKPD.Q.SKEYFSKQK | |
Retrocopy | QAFQFTDKYEKVYLAS*KPSSD>SIKPDDQKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |