RetrogeneDB ID: | retro_ecab_81 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:64314595..64315195(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000002762 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000008678 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGYPAPNFKATAVMPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGNAKIG.PAPNFKATA.MPDGQFKDI.LADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN | |
Retrocopy | MSSGNAKIGHPAPNFKATALMPDGQFKDINLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIGAS.DS.FCHLAWI.TPKKQGGL.PMNIPLVSDPK.TIAQDYGVLKADEGISFRGLFIIDDKGILR | |
Retrocopy | CQVIGASIDSRFCHLAWIKTPKKQGGLRPMNIPLVSDPKCTIAQDYGVLKADEGISFRGLFIIDDKGILR |
Parental | QITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
QI.VNDLPVG.SVDETLRL.QA.QFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYF.KQK | |
Retrocopy | QISVNDLPVGHSVDETLRLIQASQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFLKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .53 RPM | 32 .58 RPM |
SRP021940_cerebellum | 0 .36 RPM | 85 .27 RPM |
SRP021940_embryo | 0 .77 RPM | 109 .68 RPM |
SRP021940_placental_villous | 1 .20 RPM | 269 .09 RPM |
SRP021940_synovial_membrane | 1 .13 RPM | 98 .11 RPM |
SRP021940_testis | 0 .13 RPM | 85 .30 RPM |