RetrogeneDB ID: | retro_amel_539 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192492.1:2338348..2338684(-) | ||
Located in intron of: | ENSAMEG00000018150 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSAMEG00000013632 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 84.75 % |
Parental protein coverage: | 57.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSSGNAKIGHPAPNFK-ATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDR-AEEFKK |
MSSGNAKIGHPA..FK.ATAVMPDG.FK..SLSDYKGKY.VFFFYPLDF.FVCP.EII.FSDR.AEE.KK | |
Retrocopy | MSSGNAKIGHPA--FK<ATAVMPDG*FKGISLSDYKGKYIVFFFYPLDFSFVCPMEIIVFSDR<AEELKK |
Parental | LNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSD-PKRTIAQD |
LNCQV.GASVDSHFCH.AWINTPKKQGGLGPMNIPLVSD.P...IAQD | |
Retrocopy | LNCQVSGASVDSHFCHPAWINTPKKQGGLGPMNIPLVSD<PHAYIAQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |