RetrogeneDB ID: | retro_mmus_1786 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:64219944..64220406(-) | ||
Located in intron of: | ENSMUSG00000086128 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSMUSG00000028691 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523] |
Percent Identity: | 72.15 % |
Parental protein coverage: | 79.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPK |
.F.F..LDFT.VC..EII.FSDR...FK.LNCQVI..SVDS.F.HLA.INTPKKQG...PMNIP..SDPK | |
Retrocopy | LFLFSLLDFTLVCSIEIIVFSDREEDFKRLNCQVIVLSVDSDF*HLALINTPKKQGEVEPMNIPVVSDPK |
Parental | RTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKP |
.TIAQDYGVLKAD.GISFRGLFIIDD..ILRQ.TINDL.VG.SVD.I.R..QAFQFTD....VCPA.WKP | |
Retrocopy | CTIAQDYGVLKADGGISFRGLFIIDDESILRQVTINDLSVGCSVDKILRPAQAFQFTD----VCPAAWKP |
Parental | GSDTIKPDVNKSKEYFSK |
.SD.IKP.V.KS.EYF.K | |
Retrocopy | SSDNIKPNVPKSEEYFFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 62 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .00 RPM | 97 .38 RPM |
SRP007412_kidney | 0 .00 RPM | 222 .20 RPM |
SRP007412_liver | 0 .00 RPM | 363 .61 RPM |
SRP007412_testis | 0 .05 RPM | 28 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1401 |