RetrogeneDB ID: | retro_etel_460 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7614:121..637(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSETEG00000007922 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 92.44 % |
Parental protein coverage: | 86.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSSGTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGTAK.GHPAPN.KA.AVMPDGQFKDISLTDYKGKY.VFF.YPLDFTFVCPTEIIAFSDRAEEFKKLN | |
Retrocopy | MSSGTAKTGHPAPNIKAIAVMPDGQFKDISLTDYKGKYMVFFVYPLDFTFVCPTEIIAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSDSKRTIAQDYGVLKVDEGISFRGLFIIDDKGILR |
CQV.GASVDSHFCHLAWI.TPKKEGGLGPMNIPLVSD.K.TIAQDYGVLKVDEGISFR.LFI.DDKGILR | |
Retrocopy | CQVTGASVDSHFCHLAWISTPKKEGGLGPMNIPLVSDPKCTIAQDYGVLKVDEGISFRSLFITDDKGILR |
Parental | QITVNDLPVGRSVDETLRLVQAFQFTDKHGEV |
QITVNDLPVGRSVDETLRLV.AF.FTDKHGEV | |
Retrocopy | QITVNDLPVGRSVDETLRLVEAF*FTDKHGEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |