RetrogeneDB ID: | retro_mmus_3167 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:129252997..129253594(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000094530 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSMUSG00000028691 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523] |
Percent Identity: | 97.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGYPAPNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLN |
MSSGNAKIGYPAPNF.ATAVMPDGQFKDISL.EYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLN | |
Retrocopy | MSSGNAKIGYPAPNFIATAVMPDGQFKDISLREYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPK.TIAQ.YGVLKADEGISFRGLFIIDDKGILR | |
Retrocopy | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKCTIAQNYGVLKADEGISFRGLFIIDDKGILR |
Parental | QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK | |
Retrocopy | QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 62 .31 RPM |
SRP007412_cerebellum | 0 .09 RPM | 37 .21 RPM |
SRP007412_heart | 0 .28 RPM | 97 .38 RPM |
SRP007412_kidney | 0 .90 RPM | 222 .20 RPM |
SRP007412_liver | 0 .82 RPM | 363 .61 RPM |
SRP007412_testis | 0 .18 RPM | 28 .86 RPM |