RetrogeneDB ID: | retro_rnor_1401 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:58844800..58845153(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSRNOG00000017194 | ||
Aliases: | Prdx1, Hbp23 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q63716] |
Percent Identity: | 70.83 % |
Parental protein coverage: | 59.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSSGNAK-IGHPAPSFKATAVMPDGQFKDISLSDYKGKYVV-FFFYPLDFTFVCPTEIIAFSDRAEEFKK |
M.SGNA..IGHPAP.FKATAV.PDGQ...IS.S.Y.GKYVV.FF..PLD.TFVC.TEIIAFSDRAE.FK. | |
Retrocopy | MYSGNAN>IGHPAPNFKATAVVPDGQLREISRSEYRGKYVV>FFY-PLDYTFVCSTEIIAFSDRAEAFKR |
Parental | LNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGV |
LN.QV....VDS.FCHLA.INTP..QGG..PM.IPL..DP...IAQDYGV | |
Retrocopy | LNGQVMRVPVDSRFCHLAPINTPRTQGGVEPMGIPLAPDPMCAIAQDYGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .55 RPM |
SRP017611_liver | 0 .00 RPM | 185 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1786 |