RetrogeneDB ID: | retro_mmus_1466 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:48218604..48219201(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000048164 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSMUSG00000028691 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523] |
Percent Identity: | 95.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGYPAPNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLN |
MSSGNAKIGYPAPNFKAT.VMPDGQFKD.SLSEYKGKYVVFFFYPLDFTFVCPTEIIAF.DRADEFKKL. | |
Retrocopy | MSSGNAKIGYPAPNFKATGVMPDGQFKDTSLSEYKGKYVVFFFYPLDFTFVCPTEIIAFRDRADEFKKLT |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIG.SVDSHFCHL.WINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGIL. | |
Retrocopy | CQVIGVSVDSHFCHLPWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILQ |
Parental | QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKP.SDTIKPDVNKSKEYFSKQK | |
Retrocopy | QITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPSSDTIKPDVNKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 62 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .21 RPM |
SRP007412_heart | 0 .03 RPM | 97 .38 RPM |
SRP007412_kidney | 0 .19 RPM | 222 .20 RPM |
SRP007412_liver | 0 .14 RPM | 363 .61 RPM |
SRP007412_testis | 0 .00 RPM | 28 .86 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_47821 | 105 libraries | 172 libraries | 535 libraries | 175 libraries | 85 libraries |
TSS #2 | TSS_47822 | 672 libraries | 326 libraries | 74 libraries | 0 libraries | 0 libraries |