RetrogeneDB ID: | retro_sara_95 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_2666:236195..236586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSSARG00000004703 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 58.82 % |
Parental protein coverage: | 76.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | FKDISLSDYKGKYVVFFFY-PLDFTFVCP-TEIIAFSDRAEEFKKLNCQV-IGASVDSHFCHLAWINTPK |
....SLSDYKG.Y.......P.D.TFVCP..EI.AFSDRAEE.KKL.CQ....AS.DSHFCHLAWI.T.. | |
Retrocopy | YSKVSLSDYKGNYAIXXXXXP*DLTFVCP<MEITAFSDRAEELKKLKCQL<EDASIDSHFCHLAWIRT-Q |
Parental | KQGGLG-PMNIPLVSDPKRAIAQDYGVLKADEGISFRGLF-IIDDKGILRQITVNDLPVGRSVDET |
..G..G.PMNI.LVS.PK..IA.D.G.L..DEGI.F.GL....DDK.IL.Q....DL.VG.SV.ET | |
Retrocopy | ETGTTG>PMNIFLVSNPKEIIAWDDGILNTDEGILFKGLY<FMDDKCILWQVAITDLLVGCSVGET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |