RetrogeneDB ID: | retro_btau_1446 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:8031524..8032114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000010010 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSBTAG00000003642 | ||
Aliases: | PRDX1, PRX1 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q5E947] |
Percent Identity: | 70.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSSGNA-KIGHRAPQFKATAVMPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKL |
MSSGN..K.G...P..K..........K.I.L.D.KG.YVVFFFYPLDF.FVCP.E..AFSDRAEEFKKL | |
Retrocopy | MSSGNV>KLGILPPSSKLQPLCQMVSSK-ICLSDHKGRYVVFFFYPLDFAFVCPMELLAFSDRAEEFKKL |
Parental | NCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGIL |
N.QV.GAS..SHFCHLAWIN.PKKQG.LG.M.IPLIS.P.RT.AQ..GVLKADEG.SFR.LF.ID.KGI. | |
Retrocopy | NYQVTGASLGSHFCHLAWINIPKKQGRLGAMHIPLISEPERTVAQYCGVLKADEGFSFRNLFTIDGKGIF |
Parental | RQITINDLPVGRSVDETLRLVQAF-QFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQK |
.QITIN.LPVGRSVDETLRLVQAF..FTD..G.V.P..WKPG.DT.KPD.Q.SKEYFS.QK | |
Retrocopy | PQITINNLPVGRSVDETLRLVQAF>RFTDTYGDV-PVRWKPGGDTKKPDAQ-SKEYFSNQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 21 .99 RPM |
ERP005899_muscle | 0 .00 RPM | 350 .10 RPM |
SRP017611_brain | 0 .00 RPM | 66 .74 RPM |
SRP017611_kidney | 0 .18 RPM | 135 .61 RPM |
SRP017611_liver | 0 .00 RPM | 15 .93 RPM |
SRP030211_testis | 0 .30 RPM | 95 .05 RPM |