RetrogeneDB ID: | retro_rnor_2063 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:136447542..136448141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSRNOG00000017194 | ||
Aliases: | Prdx1, Hbp23 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q63716] |
Percent Identity: | 87.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSSGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYP-LDFTFVCPTEIIAFSDRAEEFKKL |
MSSGNAK.GHPAP.FKATAVMPDGQFKDISLS..KGK.V.F...P.LDFTFVCPTEI.AFSDRAEEFKKL | |
Retrocopy | MSSGNAKGGHPAPDFKATAVMPDGQFKDISLSE*KGKCVAFXXXP>LDFTFVCPTEIVAFSDRAEEFKKL |
Parental | NCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG-ISFRGLFIIDDKGI |
.C.VIGASVDSHFCH.AWINTPKKQGGLGP..IPLVSDPKRTIAQD.GVLKADEG.ISFRGLFIIDDKG. | |
Retrocopy | HCRVIGASVDSHFCHVAWINTPKKQGGLGPLSIPLVSDPKRTIAQDDGVLKADEG>ISFRGLFIIDDKGS |
Parental | LRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
L.QITINDLPVG.SVDEILRLVQAF.FTDKHGEVC.A..KPGSDTIKP.VNKSKEYFSKQK | |
Retrocopy | LHQITINDLPVGLSVDEILRLVQAF*FTDKHGEVCSASRKPGSDTIKPGVNKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .01 RPM |
SRP017611_kidney | 0 .07 RPM | 179 .55 RPM |
SRP017611_liver | 0 .00 RPM | 185 .37 RPM |