RetrogeneDB ID: | retro_cpor_1079 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_44:9218255..9218584(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSCPOG00000014137 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.41 % |
Parental protein coverage: | 55.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | AFSDRAEEFKKLNCQVIGASVDSHFCHLAWI-NTPKKQGGLGPMNIPLVSDPKRTIAQDYGV-LKADEGI |
A..DRAEEFKKLNCQVIGAS..SHFCHL.WI..T.KKQG.L.P.NIPL.SDPK...AQDY.V.LK.D.GI | |
Retrocopy | ALRDRAEEFKKLNCQVIGASMNSHFCHLVWI<HTSKKQGRLRPTNIPLASDPKHILAQDYSV<LKTDTGI |
Parental | SFRGLFIIDDKGILRQITVNDLPV-GRSVDETLRLVQAFQ-FTDKH |
SFR.LFII.DK.IL.QITVN.L.V.G.SVDETLR.VQAF..F..KH | |
Retrocopy | SFRYLFIIHDKSIL-QITVNNLSV<GCSVDETLRHVQAFS<FANKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .26 RPM |
SRP017611_kidney | 0 .10 RPM | 229 .27 RPM |
SRP017611_liver | 0 .00 RPM | 26 .51 RPM |
SRP040447_lung | 0 .00 RPM | 170 .67 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 131 .16 RPM |