RetrogeneDB ID: | retro_rnor_1488 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:44213680..44214277(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prdx1 | ||
Ensembl ID: | ENSRNOG00000017194 | ||
Aliases: | Prdx1, Hbp23 | ||
Description: | Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q63716] |
Percent Identity: | 92.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGNAK.GHPAP.FKATAVMPDGQFK.ISLSD.KGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN | |
Retrocopy | MSSGNAKTGHPAPNFKATAVMPDGQFKNISLSD*KGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIGASV.SHFCHLA.INTPKKQGG.GPM.IPLVSDPK.TIAQD.GVLKADEG.SFRGLF.ID.KG.LR | |
Retrocopy | CQVIGASVNSHFCHLA*INTPKKQGGSGPMSIPLVSDPKPTIAQDDGVLKADEGFSFRGLFLIDEKGSLR |
Parental | QITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
Q.TINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK | |
Retrocopy | QMTINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKSKEYFSKQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .55 RPM |
SRP017611_liver | 0 .00 RPM | 185 .37 RPM |