RetrogeneDB ID: | retro_etel_112 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2126:7141..7583(-) | ||
Located in intron of: | ENSETEG00000015757 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSETEG00000007922 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 88. % |
Parental protein coverage: | 74.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSDSKRTIAQDYG |
FTFVCPTEI.AFSDRAEEFKKLNCQVIGASVDSHFCHLAW.NTPKK.GGLGPM.IPLVSD.K.......G | |
Retrocopy | FTFVCPTEILAFSDRAEEFKKLNCQVIGASVDSHFCHLAWTNTPKK-GGLGPMHIPLVSDPKHHYSGLWG |
Parental | VLK-VDEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKP |
.LK.VDEGIS.RGLFIIDDKG.LRQITVNDLPVGRSVDETLRLVQAFQFTD.HG.VCPAGWKPGSDTIKP | |
Retrocopy | -LK>VDEGISLRGLFIIDDKGVLRQITVNDLPVGRSVDETLRLVQAFQFTDEHGAVCPAGWKPGSDTIKP |
Parental | DVQKSREYFA |
DVQKSREYFA | |
Retrocopy | DVQKSREYFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |