RetrogeneDB ID: | retro_mdom_555 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:286966712..286967227(-) | ||
Located in intron of: | ENSMODG00000012714 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSMODG00000002382 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 52.02 % |
Parental protein coverage: | 85.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IGRPAPNFRATAVMPDQQFKDISLSDYRGKYVVLFFYPLDFTFVCPTEI-IAFSDRAEEFKKLNCQVIGA |
IG..A..F...A.M....FKDI.L..Y.GKY...F.Y.L..T...P......F.....E.KKL.CQV..A | |
Retrocopy | IGYQASTFKVIAAMTSGKFKDINLFNYKGKYLMFFSYLLYITLYVPQRLQYSFNHQG*ELKKLYCQVASA |
Parental | SVDSHFCHLAWVNTVKKQGGLGPVNIPLVSDAKRTIAQDYGVLKADEGISFRGLFIIDEKGILRQITIND |
S..S.F.H.A.VNT.KKQG.L...N.PL..D.K..IA..YGV.KA.EG.SF..LFI.DEK.IL.QITIND | |
Retrocopy | SGASYFGHPARVNTSKKQGRLKVTNTPLIADHKYSIAKNYGVQKAYEGSSFKSLFITDEKRILHQITIND |
Parental | LPVGRSVDETLRLIQAFQFTDKYGEVC-PAGWK |
.P.G..VDE.L.L.Q.FQF..K.G..C.P.GWK | |
Retrocopy | FPLGHFVDEALYLVQDFQFIGKNGKMC<PTGWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .39 RPM | 0 .00 RPM |