RetrogeneDB ID: | retro_itri_817 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393327.1:910962..911373(-) | ||
Located in intron of: | ENSSTOG00000021864 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSSTOG00000023413 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 69.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSSGNAKIGHPAPN-FKATAVMPDGQFKDISLS-DYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKK |
MS.GNAKIGH.AP..FK.T.VMP.GQ.KDI.LS.DYKG.Y..FF..PLDF.F..PT.I.AFSDR...FK. | |
Retrocopy | MS*GNAKIGHTAPS<FKVTVVMPHGQLKDIGLS>DYKGNYVMFFYIPLDFIFKNPTGIPAFSDRV*NFKT |
Parental | LNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGI |
LNCQ.I.ASVDSHFCHL..INTPKKQG.L.PMNIPL.S.PK..IAQ.YGV.KA.EGIS.RGLFII.DK.I | |
Retrocopy | LNCQEI-ASVDSHFCHLV*INTPKKQGRLRPMNIPLVSHPKHIIAQKYGVSKAEEGISSRGLFIISDKYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |