RetrogeneDB ID: | retro_amel_1590 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193678.1:376453..376812(-) | ||
Located in intron of: | ENSAMEG00000000723 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSAMEG00000002438 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 63.41 % |
Parental protein coverage: | 70.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREE |
T..T.NKF.EELKK.G.T.IVRVC.ATY.T.LVEK.GI.V.D.PF..GA.PS.Q.V.DWL.L.K.KF.EE | |
Retrocopy | TGVTPNKFVEELKKCGITAIVRVCKATYHTALVEKVGI*VPD*PFGGGALPSSQAV-DWLCLGKMKFLEE |
Parental | PGCCIAV-HCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLL |
PGCC..V...V.GLGRA..LV.LAL.EGG.KY.DA..F.R....G.F.SKQLL | |
Retrocopy | PGCCVTV<RHVTGLGRALILVVLALVEGGVKYKDAEKF-RRRKWGTFKSKQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |