RetrogeneDB ID: | retro_eeur_687 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_70284:737..1135(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSEEUG00000006477 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 56.74 % |
Parental protein coverage: | 79.19 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | ARMNRPAPVEVTYKNMRFLITHNPTN-ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
A..N.PAPV..TYKNMRFL.THNPT..ATLN..IE.LKKYGVT.I...C...........E..H...W.F | |
Retrocopy | AQRNQPAPVRGTYKNMRFLRTHNPTE<ATLNRCIEQLKKYGVT-IMQTCMSDD*GHYSGGERRHLFSWSF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIA-VHCVAGLGRAPVLVALALI-EGGMKYEDAV-QFIRQKR |
D.GAP..NQI.D.WL.LVK.K..EEPGCCIA...CV.GL.R...L.AL.L..E...K.ED.V..FIRQK. | |
Retrocopy | DNGAPSPNQIADGWLHLVKMKSYEEPGCCIA<FCCVGGL*R--TLTALTLM<EN*VK*EDEV<DFIRQKH |
Parental | R |
R | |
Retrocopy | R |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .90 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .88 RPM |
SRP017611_liver | 0 .00 RPM | 56 .75 RPM |