RetrogeneDB ID: | retro_ggor_2180 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:68804003..68804496(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSGGOG00000022521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.14 % |
Parental protein coverage: | 95.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK-EGIHVLDWPFDDGAPPS |
PVEVT.KNMRFLIT.N.TN.TLNKF.EEL.KYGVTTIVRVCEA.YDTTLVEK.EGIHVLDWP.DDGAPPS | |
Retrocopy | PVEVTQKNMRFLITYNQTNVTLNKFREELNKYGVTTIVRVCEAIYDTTLVEK<EGIHVLDWPSDDGAPPS |
Parental | NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVA-LALIEGGMKYEDAVQFIRQKRRGAFNSKQ |
N.IVDDWLS.VKIKF.EEPG.CIA.HCVAGL..RAP.LVA.LALIEGGMKYEDAVQFIRQ.....FNSK. | |
Retrocopy | N*IVDDWLSIVKIKFCEEPGWCIAIHCVAGL-QRAPILVA<LALIEGGMKYEDAVQFIRQNQNETFNSKK |
Parental | LLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
LL.LEKY.PK..L.FKDS.GHRNNCCIQ | |
Retrocopy | LL*LEKYPPKIQLLFKDSKGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .89 RPM |
SRP007412_heart | 0 .00 RPM | 9 .41 RPM |
SRP007412_kidney | 0 .00 RPM | 61 .58 RPM |
SRP007412_liver | 0 .00 RPM | 239 .30 RPM |
SRP007412_testis | 0 .00 RPM | 138 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3212 |
Pan troglodytes | retro_ptro_2239 |
Pongo abelii | retro_pabe_2660 |