RetrogeneDB ID: | retro_ggor_2986 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:27779065..27779576(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSGGOG00000022521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MARMN.PA.V...YKN.RFLITHNPTN...N.F..ELK..GVTTIV.V..ATY...L.EKE.I.V.DWPF | |
Retrocopy | MARMNLPASVDIAYKNVRFLITHNPTNTYFNRFLQELKQDGVTTIVGV*KATYNIALLEKESIQVPDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPV-LVALALIEGGMKYEDAVQFIRQKRR |
DDG..PS.QI.D.WL.L.K.KF...PGCCIA.HC..G.G.RAPV.LVALALIEGGMKYE..VQFIR.K.. | |
Retrocopy | DDGTAPSSQIIDNWLKLMKNKFHKDPGCCIAIHCAVGFG-RAPV>LVALALIEGGMKYENVVQFIR*K*H |
Parental | GAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
G.FNSKQLLYLEKY..K..L........RNNC..Q | |
Retrocopy | GTFNSKQLLYLEKYCLKICLHLRNP---RNNCFLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .89 RPM |
SRP007412_heart | 0 .00 RPM | 9 .41 RPM |
SRP007412_kidney | 0 .00 RPM | 61 .58 RPM |
SRP007412_liver | 0 .00 RPM | 239 .30 RPM |
SRP007412_testis | 0 .00 RPM | 138 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4798 |
Pan troglodytes | retro_ptro_3190 |
Pongo abelii | retro_pabe_3732 |
Sus scrofa | retro_sscr_1186 |
Equus caballus | retro_ecab_10 |