Parental gene: | Ptp4a1, ENSMUSG00000026064 |
| Aliases: | Ptp4a1, AA415290, AU019864, C130021B01, Prl-1 |
| Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 1:30940302..30949770(-) |
>ENSMUSG00000026064
ATGGCTCGAATGAACCGCCCTGCTCCTGTGGAAGTCACATACAAGAACATGCGATTTCTTATTACACACAATCCAACCAA
TGCGACCTTAAACAAATTTATAGAGGAACTTAAGAAGTATGGAGTTACCACAATAGTAAGAGTATGTGAAGCAACTTACG
ACACTACTCTTGTGGAGAAAGAAGGCATTCATGTTCTTGACTGGCCTTTTGATGATGGTGCACCACCATCCAACCAGATT
GTCGATGACTGGCTAAGTCTTGTGAAGATTAAGTTTCGTGAAGAACCTGGTTGCTGTATTGCTGTCCATTGTGTCGCAGG
CCTTGGCAGAGCTCCGGTGCTTGTTGCCCTAGCATTAATTGAAGGTGGAATGAAATATGAAGATGCAGTACAATTCATAA
GACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTGTATCTGGAGAAGTACCGTCCGAAAATGCGGCTCCGCTTC
AAGGATTCCAATGGTCATAGAAACAACTGTTGTATTCAATAA
ATGGCTCGAATGAACCGCCCTGCTCCTGTGGAAGTCACATACAAGAACATGCGATTTCTTATTACACACAATCCAACCAA
TGCGACCTTAAACAAATTTATAGAGGAACTTAAGAAGTATGGAGTTACCACAATAGTAAGAGTATGTGAAGCAACTTACG
ACACTACTCTTGTGGAGAAAGAAGGCATTCATGTTCTTGACTGGCCTTTTGATGATGGTGCACCACCATCCAACCAGATT
GTCGATGACTGGCTAAGTCTTGTGAAGATTAAGTTTCGTGAAGAACCTGGTTGCTGTATTGCTGTCCATTGTGTCGCAGG
CCTTGGCAGAGCTCCGGTGCTTGTTGCCCTAGCATTAATTGAAGGTGGAATGAAATATGAAGATGCAGTACAATTCATAA
GACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTGTATCTGGAGAAGTACCGTCCGAAAATGCGGCTCCGCTTC
AAGGATTCCAATGGTCATAGAAACAACTGTTGTATTCAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 23 .71 RPM |
| SRP007412_cerebellum | 13 .42 RPM |
| SRP007412_heart | 15 .44 RPM |
| SRP007412_kidney | 15 .71 RPM |
| SRP007412_liver | 46 .56 RPM |
| SRP007412_testis | 28 .04 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000002438 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000002275 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000002490 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001743 | ortholog_one2one | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000009960 | ortholog_one2one | 6 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000006477 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000008183 | ortholog_one2one | 6 retrogenes | |
| Felis catus | ENSFCAG00000001199 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000112245 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022521 | ortholog_one2one | 7 retrogenes | |
| Latimeria chalumnae | ENSLACG00000007183 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000006572 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001162 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002777 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000018701 | ortholog_one2one | 5 retrogenes | |
| Mustela putorius furo | ENSMPUG00000003118 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000028788 | within_species_paralog | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000440 | ortholog_one2one | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006311 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000016743 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000018314 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000011771 | ortholog_one2many | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000046370 | ortholog_one2many | 4 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009956 | possible_ortholog | 14 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004632 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004129 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_575 | 80.20 | 58.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1192 | 80.53 | 64.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1830 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_1874 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_1891 | 98.84 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_2138 | 69.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmus_2876 | 98.84 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_mmus_2985 | 76.98 | 72.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_mmus_3053 | 62.31 | 72.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_mmus_3527 | 89.68 | 72.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000026064 retrocopies