RetrogeneDB ID: | retro_ggor_1723 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:45598840..45599302(+) | ||
Located in intron of: | ENSGGOG00000003425 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000022238 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSGGOG00000022521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.75 % |
Parental protein coverage: | 89.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MARMNRPAPVEVTYKNMR-FLITHNPTNATLNKFIEELKKYGVTTI-VRVCEATYDTTLVEKEGIHVLDW |
MA.MN.PAPVEVTYKN.R.FL.THNPTN.TLNKF.EELKKYGV.TI..RVC.ATYDTTL.EKEG.HVLDW | |
Retrocopy | MAQMNHPAPVEVTYKNTR>FLTTHNPTNVTLNKFVEELKKYGVFTI>IRVCKATYDTTLLEKEGTHVLDW |
Parental | PFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEGGMKYEDAVQFIRQKR |
PFDDG.PPSNQI.DDWLSLVKI.F..EP.CC.AVHC.AGLG.RAPVLVALALIEG.MK..D.VQF.R.K. | |
Retrocopy | PFDDGVPPSNQI-DDWLSLVKIQFHKEPRCCTAVHCIAGLG-RAPVLVALALIEGKMKDDDVVQFARKKQ |
Parental | RGAFNSKQ-LLYLEKYRP |
.GAFNSK..LLYLEKYRP | |
Retrocopy | CGAFNSKL>LLYLEKYRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .51 RPM |
SRP007412_cerebellum | 0 .08 RPM | 22 .89 RPM |
SRP007412_heart | 0 .00 RPM | 9 .41 RPM |
SRP007412_kidney | 0 .00 RPM | 61 .58 RPM |
SRP007412_liver | 0 .05 RPM | 239 .30 RPM |
SRP007412_testis | 0 .10 RPM | 138 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2171 |
Pan troglodytes | retro_ptro_1657 |
Pongo abelii | retro_pabe_2058 |
Callithrix jacchus | retro_cjac_2812 |