RetrogeneDB ID: | retro_mmus_1874 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:40560539..40561058(-) | ||
Located in intron of: | ENSMUSG00000025007 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000096592 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSMUSG00000026064 | ||
Aliases: | Ptp4a1, AA415290, AU019864, C130021B01, Prl-1 | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF | |
Retrocopy | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA | |
Retrocopy | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ | |
Retrocopy | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .42 RPM |
SRP007412_heart | 0 .00 RPM | 15 .44 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .71 RPM |
SRP007412_liver | 0 .00 RPM | 46 .56 RPM |
SRP007412_testis | 0 .00 RPM | 28 .04 RPM |